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Our Recent Publications

Here are some recent EM-containing publications from people using the EMC. Clicking on the title of an article will take you to the website of the publisher where you should be able to obtain a PDF copy of the journal article. If you are unable to obtain a copy that way, please contact the highlighted author(s) for further information. Finally, publications that do not have an IUB-associated name highlighted contain electron microscopy work done by off-campus users of EMC equipment.

2017

articles of interest for biology/structural biology EM:

Ellison, C.K., Kan, J., Dillard, R.S., Kysela, D.T., Ducret, A., Berne, C., Hampton, C.M., Wright, E.R., Biais, N., Dalia, A.B. and Brun, Y.V. (2017) Obstruction of pilus retraction stimulates bacterial surface sensing. Science 358, 535-538

LaFavers, K.A., Márquez-Nogueras, K.M., Coppens, I., Moreno, S.N.J. and Arrizabalaga, G. (2017) A novel dense granule protein, GRA41, regulates timing of egress and calcium sensitivity in Toxoplasma gondii. Cellular Microbiology 19, e12749.

Lee, L.S., Brunk, N., Haywood, D.G., Keifer,D., Pierson, E., Kondylis, P., Wang, J.C.-Y., Jacobson, S.C., Jarrold, M.F. and Zlotnick, Z. (2017) A molecular breadboard: Removal and replacement of subunits in a hepatitis B virus capsid. Protein Science.

Leung, J.M., He, Y., Zhang, F., Hwang, Y.-C., Nagayasu, E., Liu, J., Murray, J.M. and Hu, K. (2017) Stability and function of a putative microtubule-organizing center in the human parasite Toxoplasma gondii. Mol. Biol. Cell 28, 1361-1378.

Li, C., Kneller, A.R., Jacobson, C.J. and Zlotnick, A. (2017) Single particle observation of SV40 VP1 polyanion-induced assembly shows that substrate size and structure modulate capsid geometry. ACS Chem. Biol. 12, 1327–1334.

Nagayasu, E., Hwang, Y.-C., Liu, J., Murray, J.M. and Hu, K. (2017) Loss of a doublecortin (DCX) domain protein causes structural defects in a tubulin-based organelle of Toxoplasma gondii and impairs host-cell invasion. Mol. Biol. Cell 28, 411-428.

Ramsey, J., Renzi, E.C., Arnold, R.J., Trinidad, J.C. and Mukhopadhyay, S. (2017) Palmitoylation of Sindbis virus TF protein regulates its plasma membrane localization and subsequent incorporation into virions. J. Virol. 91, e02000-02016.

Rutter, B.D. and Innes, R.W. (2017) Extracellular vesicles isolated from the leaf apoplast carry stress-response proteins. Plant Physiol. 173, 728-741.


articles of interest for materials science EM:

Baird, N., Dittmar, J.W., Losovyj, Y.B., Morgan, D.G., Stein, B.D., Pink, M., Kuchkina, N.V., Serkova, Lependina, O.L., Grigoriev, M.E., Sidorov, A.I., Sulman, M.G., Shifrina, Z.B. and Bronstein, L.M. (2017) Enhancing the catalytic activity of Zn-containing magnetic oxides in a methanol synthesis: Identifying the key factors. ACS Appl. Mater. Interfaces 9, 2285-2294.

Cherkasova, N., Jadvania, V., Mannb, J., Losovyjb, Y.B., Shifrinac, Z.B., Bronstein, L.M. and Evgeny V. Rebrova, E.V. (2017) Hydrogenation of bio-oil into higher alcohols over Ru/Fe3O4-SiO2 catalysts. Fuel Processing Technology 167, 738-746.

Kunz, M.R., McClain, S.M., Chen, D.P., Koczkur, K.M., Weiner, R.G. and Skrabalak, S.E. (2017) Seed-mediated co-reduction in a large lattice mismatch system: synthesis of Pd–Cu nanostructures. Nanoscale 9, 7570–7576.

Mosey, A., Gaire, B., Kim, J., Ryu, J.E. and Cheng, R. (2017) Tunable cobalt nanoparticle synthesis by intense pulse flash annealing. AIP Advances 7, 056308.

Rugen, E.E., Koczkur, K.M. and Skrabalak, S.E. (2017) Facile synthesis of porous La–Ti–O and LaTiO2N microspheres. Dalton Trans.46, 10727-10733.

Sanchez, L., Yi, Y. and Yu, Y. (2017) Effect of partial PEGylation on particle uptake by macrophages. Nanoscale 9, 288-297.

Santana, J.S., Koczkur, K.M. and Skrabalak, S.E. (2017) Synthesis of core@shell nanostructures in a continuous flow droplet reactor: Controlling structure through relative flow rates. Langmuir 33, 6054-6061.

Sapunov, V.N., Stepacheva, А.А., Sulman, E.M., Wärnå, J., Mäki-Arvela, P., Sulman, M.G., Sidorov, A.I., Stein, B.D., Murzin, D.Y. and Matveeva, V.G. (2017) Stearic acid hydrodeoxygenation over Pd nanoparticles embedded in mesoporous hypercrosslinked polystyrene. J. Ind. Eng. Chem. 46, 426-435.

Shan, C., Martin, E.T., Peters, D.G. and Zaleski, J.M. (2017) Site-selective growth of AgPd nanodendrite-modified Au nanoprisms: High electrocatalytic performance for CO2 reduction. Chem. Mater. 29, 6030–6043

Wang, C., Sang, X., Gamler, J.T.L., Chen, D.P., Unocic, R.R. and Skrabalak, S.E. (2017) Facet-dependent deposition of highly strained alloyed shells on intermetallic nanoparticles for enhanced electrocatalysis. Nano Lett. 17, 5526-5532.

Yi, Y., Sanchez, L., Gao, Y., Lee, K. and Yu, Y. (2017) Interrogating cellular functions with designer Janus particles. Chem. Mat. 29, 1448–1460.

2016

articles of interest for biology/structural biology EM:

Chen, C., Wang, J.C.-Y., Pierson, E.E., Keifer, D.Z., Delaleau, M., Gallucci, L., Cazenave, C., Kann, M., Jarrold, M.F. and Zlotnick, A. (2016) Importin β can bind hepatitis B virus core protein and empty core-like particles and induce structural changes. PLoS Pathog. 12, e1005802.

Hoover, H.S., Wang, J.C., Middleton, S., N,i P., Zlotnick, A., Vaughan, R.C. and Kao, C.C. (2016) Phosphorylation of the brome mosaic virus capsid regulates the timing of viralinfection. J Virol 90, 7748-60.

Iyer, J., Wang, Q., Le, T., Pizzo, L., Grönke, S., Ambegaokar, S.S., Imai, Y., Srivastava, A., Troisí, B.L., Mardon, G., Artero, R., Jackson, G.R., Isaacs, A.M., Partridge, L., Lu, B., Kumar, J.P. and Girirajan, S. (2016) Quantitative assessment of eye phenotypes for functional genetic studies using Drosophila melanogaster. G3 (Bethesda) 6, 1427-1437.

Liang, X., Mahato, S., Hemmerich, C. and Zelhof, A.C. (2016) Two temporal functions of Glass: Ommatidium patterning and photoreceptor differentiation.Dev. Bio. 414, 4-20.

Molugu,S.K., Hildenbrand, Z.L., Morgan, D.G., Sherman, M.B., He,L., Georgopoulos, C., Sernova, N.V., Kurochkina, L.P., Mesyanzhinov, V.V., Miroshnikov, K.A. and Bernal, R.A. (2016) Ring separation highlights the protein folding mechanism used by the phage EL encoded chaperonin. Structure 14, 1-10.

Myagmarjav, B.-E., Konkol, M.A., Ramsey, J., Mukhopadhyay, S. and  Kearns, D.B. (2016) ZpdN, a plasmid-encoded sigma factor homolog, induces pBS32-dependent cell death in Bacillus subtilis. J. Bacteriol. 198, 2975-2984.

Nagayasu, E., Hwang, Y.C., Liu, J., Murray, J.M. and Hu, K. (2016) Loss of a doublecortin (DCX) domain protein causes structural defects in a tubulin-based organelle of Toxoplasma gondii and impairs host-cell invasion. Mol. Biol. Cell (e-pub).

Pierson, E.E., Keifer, D.Z., Asokan, A. and Jarrold, M.F. (2016) Resolving adeno-associated viral particle diversity with charge detection mass spectrometry. Anal. Chem. 88, 6718-6725.

Pierson, E.E., Keifer, D.Z., Kukreja, A.A., Wang, J.C.-Y., Zlotnick, A. and Jarrold, M.F. (2016) Charge detection mass spectrometry identifies preferred non-icosahedral polymorphs in the self-assembly of woodchuck hepatitis virus capsids. J Mol. Biol. 428, 292-300.

Rutter B. and Innes, R.W. (2016) Extracellular vesicles isolated from the leaf apoplast carry stress response proteins. Plant Physiol., in press.

Saxena, P., He, L., Malyutin, A., Datta, S.A.K., Rein, A., Bond, K.M., Jarrold, M.F., Spilotros, A., Svergun, D., Douglas, T. and Dragnea, B. (2016) Virus matryoshka: A bacteriophage particle-guided molecular assembly approach to a monodisperse model of the immature human immunodeficiency virus. Small 12, 5862-5872.

Schwarz, B., Morabito, K.M., Ruckwardt, T.J., Patterson, D.P., Avera, J., Miettinen, H.M., Graham, B.S. and Douglas, T. (2016) Viruslike particles encapsidating respiratory syncytial virus M and M2 proteins induce robust T cell responses. ACS Biomater. Sci. Eng. 2, 2324-2332.

Weasner, B.M., Weasner, B.P., Neuman, S.D., Bashirullah, A. and Kumar, J.P. (2016) Retinal Expression of the Drosophila eyes absent Gene Is Controlled by Several Cooperatively Acting Cis-regulatory Elements. PLOS Genet. 12, 1006462.


articles of interest for materials science EM:

Ataee-Esfahani, H. and Skrabalak, S.E. (2016) Manipulating the architecture of Pd@Pt nanostructures through metal-selective capping agent interactions. Chem. Comm. 52, 10783-10786.

Baird, N., Losovyj, Y., Yuzik-Klimova, E.Yu., Kuchkina, N.V., Shifrina, Z.B., Pink, M., Stein, B.D., Morgan, D.G., Wang, T, Rubin, M., Sidorov, A., Sulman, E.M. and Bronstein, L.M. (2016) Zinc-containing magnetic oxides stabilized by a polymer: One phase or two? ACS Appl. Mater. Interfaces 8, 891-899.

Chen, D.P. and Skrabalak, S.E. (2016) Synthesis of (Ga1-xZnx)(N1-x)Ox)) with enhanced visible-light absorption and reduced defects by suppressing Zn volatilization. Inorganic Chemistry 55, 3811-3828.

Delalande, L., Tsvetkova, I.B., Zeng, C., Bond, K., Jarrold, M.F. and Dragnea, B. (2016) Catching a virus in a molecular net. Nanoscale 8, 16221-16228.

Fu, J. and Skrabalak, S.E. (2016) Aerosol synthesis of shape-controlled template particles: aroute to Ta3N5 nanoplates and octahedra as photocatalysts. J. Mater. Chem. A 4, 8451-8457.

Laskar, M. and Skrabalak, S.E. (2016) A balancing act: manipulating reactivity of shape-controlled metal nanocatalysts through bimetallic architecture. J. Mater. Chem. A (Emerging Investigators Special Issue) 4, 6911-6918.

Manaenkov, O.V., Mann, J.J., Kislitza, O.V., Losovyj, Y., Stein, B.D., Morgan, D.G., Pink, M., Lependina, O.L., Shifrina, Z.B., Matveeva, V.G., Sulman E.M. and Bronstein, L.M. (2016) Ru-containing magnetically recoverable catalysts: a sustainable pathway from cellulose to ethylene and propylene glycols. ACS Appl. Mater. Interfaces 8, 21285-21293.

Mann, J., Doluda, V.Yu., Leonard, C., Losovyj, Y.B., Morgan, D.G., Bukalov, S.S., Shifrina, Z., Stein, B.D., Cherkasov, N.; Rebrov, E. V., Harms, Z.D., Pink, M., Sulman, E.M. and Bronstein, L.M. (2016) Metal oxide-zeolite composites in transformation of methanol to hydrocarbons: Do iron oxide and nickel oxide matter? RSC Advances 6, 75166-75177.

Nemyginai, N.A., Nikoshvili, L.Zh., Bykov, A.V., Sidorov, A.I., Molchanov, V.P., Sulman, M.G., Tiamina, I.Yu., Stein, B.D., Matveeva, V.G., Sulman, E.M. and Kiwi-Minsker, L. (2016) Catalysts of suzuki cross-coupling based on functionalized hyper-cross-linked polystyrene: Influence of precursor nature. Org. Process Res. Dev. 20, 1453–1460.

Rehm, T.H., Hofmann, C., Löb, P., Shifrina, Z.B., Morgan, D.G. and Bronstein, L.M. (2016) Magnetic Fixation of Dendron-Functionalized Iron Oxide Nanoparticles with Palladium for Continuous-Flow Suzuki Reactions. Chem. Eng. Tech. 2016, 1328-1338.

Smith, A.F., Harvey, S.M., Skrabalak, S.E. and Weiner, R.G. (2016) Engineering high refractive index sensitivity through the internal and external composition of bimetallic nanocrystals. Nanoscale 8, 16841-16845.

Walker, J.M. and Zaleski, J.M. (2016) A simple route to diverse noble metal-decorated iron oxide nanoparticles for catalysis. Nanoscale 8, 1535-1544.

Wang, C., Chen, D.P., Sang, X., Unocic, R. and Skrabalak, S.E. (2016) Size-dependent disorder-order transformation in the synthesis of monodisperse intermetallic PdCu nanocatalysts. ACS Nano 10, 6345-6353.

Weiner, R.G. and Skrabalak, S.E. (2016) Seed-mediated co-reduction as a route to shape-controlled trimetallic nanocrystals. Chem. Mater. 28, 4139-4142

Wirey, M., Hunt, M., Blensdorf, T., Stein, B.D., Werner-Zwanziger, U., Hanson, M.A., Mahmoud, W.E., Al-Ghamdi, A.A., Carini, J. and Bronstein, L.M. (2016) Induced microphase separation in hybrid composite polymer electrolytes based on poly(acrylonitrile-r-butadienes) and ionic liquids. Macromolecular Chem. Phys. 217, 794-803.

Zahedian, M., Huang, X., Tsvetkova, I.B., Rotello, V.M. Schaich, W.L and Dragnea, B. (2016) Toward virus-like surface plasmon strain sensors. J. Phys. CHem. B 120, 5896-5906.

Here are links to lists of earlier publications: